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update to 4.0.7

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This commit is contained in:
Luis Martinez 2022-02-10 15:46:34 -06:00
parent ecbc473e4c
commit b86f22e75c
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2 changed files with 24 additions and 11 deletions
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13
.SRCINFO
View file

@ -1,12 +1,19 @@
pkgbase = python-pydna
pkgdesc = Data structures for double-stranded DNA & simulation of homologous recombination
pkgver = 4.0.6
pkgrel = 2
pkgver = 4.0.7
pkgrel = 1
url = https://github.com/bjornfjohansson/pydna
changelog = CHANGELOG.md
arch = any
license = BSD
checkdepends = python-requests-mock
checkdepends = ipython
checkdepends = python-codon-adaptation-index
makedepends = git
makedepends = python-build
makedepends = python-install
makedepends = python-wheel
makedepends = python-sphinx
makedepends = python-setuptools
makedepends = python-setuptools-scm
makedepends = python-pytest-runner
@ -21,7 +28,7 @@ pkgbase = python-pydna
optdepends = python-numpy: gel simulation
optdepends = python-pint: gel simulation
optdepends = python-scipy: gel simulation
source = python-pydna::git+https://github.com/bjornfjohansson/pydna#tag=4.0.6
source = python-pydna::git+https://github.com/bjornfjohansson/pydna#tag=4.0.7
sha256sums = SKIP
pkgname = python-pydna

22
PKGBUILD
View file

@ -2,8 +2,8 @@
# Contributor: Clint Valentine <valentine.clint@gmail.com>
pkgname=python-pydna
pkgver=4.0.6
pkgrel=2
pkgver=4.0.7
pkgrel=1
pkgdesc='Data structures for double-stranded DNA & simulation of homologous recombination'
arch=('any')
url='https://github.com/bjornfjohansson/pydna'
@ -23,9 +23,14 @@ optdepends=(
'python-scipy: gel simulation')
makedepends=(
'git'
'python-build'
'python-install'
'python-wheel'
'python-sphinx'
'python-setuptools'
'python-setuptools-scm'
'python-pytest-runner')
checkdepends=('python-requests-mock' 'ipython' 'python-codon-adaptation-index')
changelog=CHANGELOG.md
source=("$pkgname::git+$url#tag=$pkgver")
sha256sums=('SKIP')
@ -37,21 +42,22 @@ sha256sums=('SKIP')
build() {
cd "$pkgname"
python setup.py build
## FIXME: sphinx-build cannot find pydna
python -m build --wheel --skip-dependency-check --no-isolation
## FIXME: sphinx-build cannot find pydna metadata
# cd docs
# sphinx-build -b man ./ build
# PYTHONPATH=../ sphinx-build -b man ./ _build/man
}
check() {
cd "$pkgname"
## FIXME: tests fail with python-prettytable=0.7.2
python setup.py pytest || true
## FIXME: certain tests fail
PYTHONPATH=./ pytest -x --disable-warnings || true
}
package() {
export PYTHONHASHSEED=0
cd "$pkgname"
PYTHONHASHSEED=0 python setup.py install --root="$pkgdir/" --optimize=1 --skip-build
python -m install --optimize=1 --destdir="$pkgdir/" dist/*.whl
install -Dm644 LICENSE.txt "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
install -Dm644 README.md -t "$pkgdir/usr/share/doc/$pkgname/"
}