From b86f22e75c9d06850b0df2126c329ed28ea972f4 Mon Sep 17 00:00:00 2001
From: Luis Martinez <luis.martinez@disroot.org>
Date: Thu, 10 Feb 2022 15:46:34 -0600
Subject: [PATCH] update to 4.0.7

---
 .SRCINFO | 13 ++++++++++---
 PKGBUILD | 22 ++++++++++++++--------
 2 files changed, 24 insertions(+), 11 deletions(-)

diff --git a/.SRCINFO b/.SRCINFO
index e119b6d7999b..4cdd224e26b5 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,12 +1,19 @@
 pkgbase = python-pydna
 	pkgdesc = Data structures for double-stranded DNA & simulation of homologous recombination
-	pkgver = 4.0.6
-	pkgrel = 2
+	pkgver = 4.0.7
+	pkgrel = 1
 	url = https://github.com/bjornfjohansson/pydna
 	changelog = CHANGELOG.md
 	arch = any
 	license = BSD
+	checkdepends = python-requests-mock
+	checkdepends = ipython
+	checkdepends = python-codon-adaptation-index
 	makedepends = git
+	makedepends = python-build
+	makedepends = python-install
+	makedepends = python-wheel
+	makedepends = python-sphinx
 	makedepends = python-setuptools
 	makedepends = python-setuptools-scm
 	makedepends = python-pytest-runner
@@ -21,7 +28,7 @@ pkgbase = python-pydna
 	optdepends = python-numpy: gel simulation
 	optdepends = python-pint: gel simulation
 	optdepends = python-scipy: gel simulation
-	source = python-pydna::git+https://github.com/bjornfjohansson/pydna#tag=4.0.6
+	source = python-pydna::git+https://github.com/bjornfjohansson/pydna#tag=4.0.7
 	sha256sums = SKIP
 
 pkgname = python-pydna
diff --git a/PKGBUILD b/PKGBUILD
index e487c4ed8766..2ebbdbfa789e 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,8 +2,8 @@
 # Contributor: Clint Valentine <valentine.clint@gmail.com>
 
 pkgname=python-pydna
-pkgver=4.0.6
-pkgrel=2
+pkgver=4.0.7
+pkgrel=1
 pkgdesc='Data structures for double-stranded DNA & simulation of homologous recombination'
 arch=('any')
 url='https://github.com/bjornfjohansson/pydna'
@@ -23,9 +23,14 @@ optdepends=(
 	'python-scipy: gel simulation')
 makedepends=(
 	'git'
+	'python-build'
+	'python-install'
+	'python-wheel'
+	'python-sphinx'
 	'python-setuptools'
 	'python-setuptools-scm'
 	'python-pytest-runner')
+checkdepends=('python-requests-mock' 'ipython' 'python-codon-adaptation-index')
 changelog=CHANGELOG.md
 source=("$pkgname::git+$url#tag=$pkgver")
 sha256sums=('SKIP')
@@ -37,21 +42,22 @@ sha256sums=('SKIP')
 
 build() {
 	cd "$pkgname"
-	python setup.py build
-	## FIXME: sphinx-build cannot find pydna
+	python -m build --wheel --skip-dependency-check --no-isolation
+	## FIXME: sphinx-build cannot find pydna metadata
 	# cd docs
-	# sphinx-build -b man ./ build
+	# PYTHONPATH=../ sphinx-build -b man ./ _build/man
 }
 
 check() {
 	cd "$pkgname"
-	## FIXME: tests fail with python-prettytable=0.7.2
-	python setup.py pytest || true
+	## FIXME: certain tests fail
+	PYTHONPATH=./ pytest -x --disable-warnings || true
 }
 
 package() {
+	export PYTHONHASHSEED=0
 	cd "$pkgname"
-	PYTHONHASHSEED=0 python setup.py install --root="$pkgdir/" --optimize=1 --skip-build
+	python -m install --optimize=1 --destdir="$pkgdir/" dist/*.whl
 	install -Dm644 LICENSE.txt "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
 	install -Dm644 README.md -t "$pkgdir/usr/share/doc/$pkgname/"
 }