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103 lines
5.3 KiB
Bash
103 lines
5.3 KiB
Bash
# Maintainer: Astro Benzene <universebenzene at sina dot com>
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pkgbase=python-specutils
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_pyname=${pkgbase#python-}
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pkgname=("python-${_pyname}" "python-${_pyname}-doc")
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pkgver=2.3.0
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pkgrel=1
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pkgdesc="Astropy Affiliated package for 1D spectral operations"
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arch=('any')
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url="http://specutils.readthedocs.io"
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license=('BSD-3-Clause')
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makedepends=('python-setuptools-scm'
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'python-build'
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'python-installer'
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'python-sphinx-astropy'
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'python-matplotlib'
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'python-gwcs'
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'python-ndcube>=2.0'
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'graphviz') # wheel required by new setuptools
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checkdepends=('python-pytest-astropy-header'
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'python-pytest-asdf-plugin'
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'python-pytest-doctestplus'
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# 'python-pytest-xdist'
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# 'python-pytest-timeout'
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'python-pytest-remotedata') # matplotlib, gwcs, ndcube already in makedepends; header in conftest.py
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source=("https://files.pythonhosted.org/packages/source/${_pyname:0:1}/${_pyname}/${_pyname}-${pkgver}.tar.gz"
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"https://stsci.box.com/shared/static/28a88k1qfipo4yxc4p4d40v4axtlal8y.fits"
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"https://data.sdss.org/sas/dr16/sdss/spectro/redux/26/spectra/1323/spec-1323-52797-0012.fits"
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'use_local_doc_fits_offline.patch')
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#https://dr15.sdss.org/sas/dr15/manga/spectro/redux/v2_4_3/8485/stack/manga-8485-1901-LOGRSS.fits.gz
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md5sums=('d66063bc9255e2db745feda5800e40e8'
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'6de4c8ee5659e87a302e3de595074ba5'
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'3586c5d0810108a182ba9146908dc180'
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'1bda649a83a3d021e75dc09a0da395b3')
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prepare() {
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cd ${srcdir}/${_pyname}-${pkgver}
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cp ${srcdir}/*.fits docs
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patch -Np1 -i "${srcdir}/use_local_doc_fits_offline.patch"
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# sed -i "/astropy.utils.exceptions/a \ ignore:Subclassing validator classes is not intended:DeprecationWarning" setup.cfg
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# sed -i "/astropy.utils.exceptions/a \ ignore:pkg_resources is deprecated as an API:DeprecationWarning" setup.cfg
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}
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build() {
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cd ${srcdir}/${_pyname}-${pkgver}
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python -m build --wheel --no-isolation
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msg "Building Docs"
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PYTHONPATH="../build/lib" make -C docs html
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}
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check() {
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cd ${srcdir}/${_pyname}-${pkgver}
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# skip some tests that need lots of online data or cost lots of time
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pytest --ignore=docs/_build \
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--ignore=specutils/io/asdf/tags/tests/test_spectra.py \
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--ignore=specutils/io/default_loaders/tests/test_apogee.py \
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--deselect=specutils/tests/test_loaders.py::test_ctypye_not_compliant[remote_data_path0] \
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--deselect=specutils/tests/test_loaders.py::test_hst_cos[remote_data_path0] \
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--deselect=specutils/tests/test_loaders.py::test_hst_cos[remote_data_path1] \
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--deselect=specutils/tests/test_loaders.py::test_hst_stis[remote_data_path0] \
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--deselect=specutils/tests/test_loaders.py::test_hst_stis[remote_data_path1] \
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--deselect=specutils/tests/test_loaders.py::test_hst_stis[remote_data_path2] \
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--deselect=specutils/tests/test_loaders.py::test_apstar_loader \
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--deselect=specutils/tests/test_loaders.py::test_manga_cube \
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--deselect=specutils/tests/test_loaders.py::test_manga_cube \
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--deselect=specutils/tests/test_loaders.py::test_manga_rss \
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--deselect=specutils/tests/test_loaders.py::test_sdss_spplate \
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--deselect=specutils/tests/test_loaders.py::test_sdss_spspec \
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--deselect=specutils/tests/test_loaders.py::test_sdss_compressed[gzip] \
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--deselect=specutils/tests/test_loaders.py::test_sdss_compressed[bzip2] \
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--deselect=specutils/tests/test_loaders.py::test_sdss_compressed[xz] \
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--deselect=specutils/tests/test_loaders.py::TestAAOmega2dF::test_with_rwss[remote_data_path0] \
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--deselect=specutils/tests/test_loaders.py::TestAAOmega2dF::test_without_rwss[remote_data_path0] \
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--deselect=specutils/tests/test_loaders.py::TestAAOmega2dF::test_with_rwss_guess[remote_data_path0] \
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--deselect=specutils/tests/test_loaders.py::TestAAOmega2dF::test_without_rwss_guess[remote_data_path0] \
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--deselect=specutils/tests/test_loaders.py::test_apvisit_loader \
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--deselect=specutils/tests/test_loaders.py::test_iraf_multispec_chebyshev \
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--deselect=specutils/tests/test_loaders.py::test_iraf_multispec_legendre \
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--deselect=specutils/tests/test_loaders.py::test_muscles_loader \
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--deselect=specutils/tests/test_loaders.py::test_subaru_pfs_loader \
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--deselect=specutils/tests/test_spectral_axis.py::test_create_spectral_axis || warning "Tests failed" # -vv -l -ra --color=yes -o console_output_style=count -p xdist -n 4
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}
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package_python-specutils() {
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depends=('python>=3.11' 'python-scipy>=1.14' 'python-gwcs>=0.25.1' 'python-ndcube>=2.0') # astropy asdf asdf-astropy required by gwcs
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optdepends=('python-specutils-doc: Documentation for Specutils')
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cd ${srcdir}/${_pyname}-${pkgver}
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install -D -m644 -t "${pkgdir}/usr/share/licenses/${pkgname}" licenses/*
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install -D -m644 README.rst -t "${pkgdir}/usr/share/doc/${pkgname}"
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python -m installer --destdir="${pkgdir}" dist/*.whl
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}
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package_python-specutils-doc() {
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pkgdesc="Documentation for Python Specutils module"
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cd ${srcdir}/${_pyname}-${pkgver}/docs/_build
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install -D -m644 -t "${pkgdir}/usr/share/licenses/${pkgname}" ../../licenses/*
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install -d -m755 "${pkgdir}/usr/share/doc/${pkgbase}"
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cp -a html "${pkgdir}/usr/share/doc/${pkgbase}"
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}
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